Arabidopsis protein database

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August undefined, 2024

Web12 ore fa · For the Western blotting test of the Arabidopsis leaves, the protein content was measured using the method of Bradford (1976). Proteins were separated according to molecular weight by sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) on a 10%–14% gradient gel and then transferred to an immobilon-P … Web1 gen 2005 · Arabidopsis nucleolar protein database (AtNoPDB) Nucleic Acids Res. 2005 Jan 1;33(Database issue):D633-6. doi: 10.1093/nar/gki052. Authors John W S Brown 1 , Peter J Shaw, Paul Shaw, David F Marshall. Affiliation 1 Gene Expression Programme ...

TAIR - BLAST - Arabidopsis

Web1 gen 2013 · The Arabidopsis Protein Phosphorylation Site Database: Description: The Arabidopsis Protein Phosphorylation Site Database (PhosPhAt 4.0) contains information on Arabidopsis phosphorylation sites which were identified by mass spectrometry in large scale experiments by different research groups. WebEukaryotic Subcellular Localization DataBase (eSLDB) A database of protein subcellular localization which aims to provide an annotation for the entire proteomes of eukaryotic … is allstate a good insurance

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Web25 ott 2007 · To infer Arabidopsis protein interactions, we mapped several model organismal (e.g. S. cerevisiae, D. melanogaster, C. elegans and H. sapiens) protein interaction data and orthologs to Arabidopsis. In addition, we used the atlas of Arabidopsis development microarray data (Acc.no: ME00319) from the TAIR database … WebPhosphorylation site database: The Arabidopsis Protein Phosphorylation Site Database (PhosPhAt 4.0) contains information on Arabidopsis phosphorylation sites which were … WebA specialized database (DB) for Arabidopsis membrane proteins, ARAMEMNON, was designed that facilitates the interpretation of gene and protein sequence data by integrating features that are presently only available from individual sources. Using several publicly available prediction programs, putative integral membrane proteins were identified ... is allstate a mutual company

DAtA: Database of Arabidopsis thaliana Annotation - PMC

Arabidopsis nucleolar protein database (AtNoPDB) Nucleic Acids ...

WebPPDB is a Plant Proteome DataBase for Arabidopsis thaliana and maize (Zea mays). Initially PPDB was dedicated to plant plastids, but has now expanded to the whole plant proteome – hence it ... All protein-encoding gene models in … WebANAP integrates 11 Arabidopsis protein interaction databases, comprising 201,699 unique protein interaction pairs, 15,208 identifiers (including 11,931 TAIR AGI codes), … oliver library log in taraWeb23 ago 2004 · PLASdb is a relational database of the nuclear-encoded Arabidopsis proteins (hereinafter proteins) classified according to their pattern of sequence similarity … oliver lgr investment group

"WebFiles containing protein domains, molecular weights, isoelectric points, TargetP predictions, transmembrane domains, and SCOP structure information for all TAIR proteins. Protocols Contains protocols for growing Arabidopsis and other common laboratory procedures, along with archived Weeds World and Arabidopsis Information Service (AIS) articles. " - Arabidopsis protein database

Arabidopsis protein database

WebWe describe a proteome-wide binary protein-protein interaction map for the interactome network of the plant Arabidopsis thaliana containing ~6,200 highly reliable interactions between ~2,700 proteins. Community analyses of the resulting network shows the global organization of plant biological processes. Many novel hypothetical functional links ... Web6 feb 2024 · Brandão MM, Dantas LL, Silva-Filho MC. AtPIN: Arabidopsis thaliana protein interaction network. BMC Bioinformatics. 2009;10:454. Article PubMed PubMed Central …

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WebProtein Subcellular Localization . LocDB is a expert curated database that collects experimental annotations for the subcellular localization of proteins in Human (Homo sapiens) and Weed (Arabidopsis thaliana).The database also contains predictions of subcellular localization from a variety of state-of-the-art prediction methods for all … WebWe have undertaken to bring these various data sources together to build SUBA, a SUBcellular location database for Arabidopsis proteins. The localisation data in SUBA …

Web11 mar 2024 · Arabidopsis protein–protein interactions were downloaded from STRING 30 and the number of ... Szklarczyk, D. et al. The STRING database in 2024: quality-controlled protein-protein ... WebAtNoPDB -- Arabidopsis nucleolar protein database. Search for information on 217 nucleolar proteins identified in a proteomic analysis of nucleoli isolated from Arabidopsis cell culture. AtPID -- Arabidopsis thaliana protein interactome database. An integrative platform for plant systems biology.

Web1 gen 2024 · The initial version of PCoM-DB (launched in January 2013) included protein complex data for Synechocystis whole cells and Arabidopsis thaliana thylakoid membranes. Here we report PCoM-DB version 2.0, which includes new data sets and analytical tools. Additional data are included from whole cells of the pelagic marine … Web4 apr 2024 · PHD_ATX1_2_like; PHD finger found in Arabidopsis thaliana histone-lysine N-methyltransferase arabidopsis trithorax-like protein ATX1, ATX2, and similar proteins cd15662 Location: 668 → 784 ePHD_ATX1_2_like; Extended PHD finger found in Arabidopsis thaliana ATX1, -2, and similar proteins pfam00855 Location: 299 → 389 …

Web31 dic 2009 · Protein-protein interactions (PPIs) constitute one of the most crucial conditions to sustain life in living organisms. To study PPI in Arabidopsis thaliana we have developed AtPIN, a database and web interface for searching and building interaction networks based on publicly available protein-protein interaction datasets. All …

Web12 apr 2024 · The superfamily of soluble N-ethylmaleimide-sensitive factor attachment protein receptor (SNARE) proteins mediates membrane fusion during vesicular transport between endosomes and the plasma membrane in eukaryotic cells, playing a vital role in plant development and responses to biotic and abiotic stresses. Peanut (Arachis … is all star health reputableWebA specialized database (DB) for Arabidopsis membrane proteins, ARAMEMNON, was designed that facilitates the interpretation of gene and protein sequence data by … is all star team up in 2k23http://interactome.dfci.harvard.edu/A_thaliana/ oliver library system oliver lieth mcdermottWebThe Arabidopsis Information Resource is designed to be a comprehensive resource about Arabidopsis for the research community ... and genome survey (GSS) sequences downloaded from GenBank and protein sequences from the AGI and SwissProt. Approximately 95 Mb ... For more information about the database and data sources and … oliver lifely luwareWebAlphaFold Protein Structure Database Functional Analysis Tools for Post-Translational Modifications(FAT-PTM) Plant Proteome Database Plant PTM Viewer: Reagents Agrisera (antibody) PhytoAB (antibody) RIKEN BioResource Research Center (Seed/DNA) is allstate a public companyWebEukaryotic Subcellular Localization DataBase (eSLDB) A database of protein subcellular localization which aims to provide an annotation for the entire proteomes of eukaryotic organisms. The database contains the experimental localizations, when available, the homology-based annotations, when feasible, and predictions performed with machine ... is all star music resort open